Scaffold Ga0311339

Basic Information
Taxon OID	3300029999 Open in IMG/M
Scaffold ID	Ga0311339_10000898 Open in IMG/M
Source Dataset Name	I_Palsa_E3 coassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029999 Open in IMG/M

Scaffold ID

Ga0311339_10000898 Open in IMG/M

Source Dataset Name

I_Palsa_E3 coassembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	53925
Total Scaffold Genes	49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	37 (75.51%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

53925

Total Scaffold Genes

49 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

37 (75.51%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Ecosystem

Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Abisko, Stordalen Mire
Coordinates	Lat. (^o)	68.3535	Long. (^o)	19.0473	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Sweden: Abisko, Stordalen Mire

Coordinates

Lat. (^o)

68.3535

Long. (^o)

19.0473

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F002376	Metagenome / Metatranscriptome	566	Y
F065989	Metagenome / Metatranscriptome	127	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0311339_1000089834	F002376	AGG	MQVLERLIRFARKTPREQLGGVRYRLEEMDWYWKIRKSGNDRTTYVIGLFGTGRLYINELMLQHIGERAKYFRKHTIRLHPCSTSFIYSHHATIKYVSRLQELPAVTSRILEAVRSRSADLIFIYRHPLDSLLSNWVWWRIYLRNTTHGSVISELYKNTDDLCDELERNFLEFKAFAEGNPDFYSAIAGPRFLSFPEFVEETELYLQTASLSLRLEDFMTDPLKEFSKIAKAMSVDLDLSRLRIEPPKTKPYRYLAVKEKVPLFRDFINDLNAETKIRIEKIGYRLQPEGLS
Ga0311339_1000089847	F065989	N/A	MKILVVHPDDSLEVGAWAGTRWDWAVDLGWSGRHAYSQKSERLGCRVFSIYELLDSARHRNQLREILALGLEQVVDSESVDWWDVFSPLSHQQLEQLLLLSALIEQIPENAEIFATRPHFALRVLSLLLNREIKTFSEDRSTGDGQLGFRARWHRYVKATLALHPAQIVEIAFDKWDADYELRRHFRRTPRTSTPAFLLPSAYINVSRAQVAYARMLPNRRFLLVVTRRNGRLQTLPSNVDFRSLASYAPPFSASRNEERIRLLARWQEVQNDLFETNSVLRLAKKLCVFDGFANFLKHGLGVRDAWREVFANEPITAVLSADEYNPYTRLPILLAKPRKLRTVFCDHGALGSSFGFRRPVSDTYLVKGEMARDYNIEWCSMSADKIVVGGPPEPHDPLPSLNQNEKDRIVFYSEAYELSSARTASFYAELLPELCSLASRTNRKVIVKLHPFESLRVRRALIGRVLSPEQRSLVEMREGPMTPDLFTRAWCSLTVESSVAVESTLNGVPCFLCSWFDASWYDYAKQYAKYSAGYPLDSPQRIREIPQLLEHLLITEATRRKLQTSMSPEQLDSILCWP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0311339_10000898

Overview

Ecosystem & Geography

Associated Families

Sequences